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L21, Peter Kratzer, Kinetic Monte Carlo




Validating clustering of molecular dynamics simulations using polymer models

Validating clustering of molecular dynamics simulations using polymer models


Figure 2 Radius of gyration statistics. A dotted line indicates the mean Rg for the entire simulation. Few people in the HPC space knew much about NVIDIA then — its products were mostly sold to gamers and architects — and so the implications of developments in the 3D graphics field had gone unremarked by most of the scientific computing world. The model polymers have certain known properties meta-stable states, transition states, etc. Figure 8 Dynamic Model clustering results. Figure 7 Cyclical Model clustering results. In addition, because clustering of lowest energy models arising from homologous sequences only happens when the estimation of the helix tilt is correct, it may provide a validation for the helix tilt estimate. Figure 3 Linear Model clustering results. The host CPU was completely responsible for writing the data representing the color of each display pixel or character into the frame buffer. The statistics and features of clusters that describe these properties can then be used to inform the analysis of molecular dynamics simulations. Figure 11 FXFG clustering results. Figure 5 Rotation Model clustering results.

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Validating clustering of molecular dynamics simulations using polymer models


Figure 2 Radius of gyration statistics. A dotted line indicates the mean Rg for the entire simulation. Few people in the HPC space knew much about NVIDIA then — its products were mostly sold to gamers and architects — and so the implications of developments in the 3D graphics field had gone unremarked by most of the scientific computing world. The model polymers have certain known properties meta-stable states, transition states, etc. Figure 8 Dynamic Model clustering results. Figure 7 Cyclical Model clustering results. In addition, because clustering of lowest energy models arising from homologous sequences only happens when the estimation of the helix tilt is correct, it may provide a validation for the helix tilt estimate. Figure 3 Linear Model clustering results. The host CPU was completely responsible for writing the data representing the color of each display pixel or character into the frame buffer. The statistics and features of clusters that describe these properties can then be used to inform the analysis of molecular dynamics simulations. Figure 11 FXFG clustering results. Figure 5 Rotation Model clustering results.

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2 thoughts on “Validating clustering of molecular dynamics simulations using polymer models

  1. [RANDKEYWORD
    Zolobar

    Figure 9 Sampled structures from the FG-nup simulations. Figure 7 Cyclical Model clustering results.

  2. [RANDKEYWORD
    Vudotaur

    This diagram outlines the process of verifying the results of a clustering algorithm applied to molecular dynamics simulations.

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